Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00336.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2926
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32


Found at i:536 original size:156 final size:157

Alignment explanation


    Indices: 248--543  Score: 357
    Period size: 156  Copynumber: 1.9  Consensus size: 157

        238 CTATTGGCAG

                                *                 *                          
        248 TGCCTTTATTTAGTTTCCAGTAACTTAATTAGCTTAGATTTCTCCAAATCGTTGAGAAAACGAAG
          1 TGCCTTTATTTAGTTTCCAGGAACTTAATTAGCTTAGAGTTCTCCAAATCGTTGAGAAAACGAAG

                                                *  *    *      *             
        313 TCACGAATCAATTTGATTTGTATGAAATGAAAAACGGCGGTGGGGAAGACTCGGTGCATAAACCT
         66 TCACGAATCAATTTGATTTGTATGAAATGAAAAACGACGATGGGCAAGACTAGGTGCATAAACCT

                                       
        378 AGGGTTTTGATTTGAATTTATTAGCGT
        131 AGGGTTTTGATTTGAATTTATTAGCGT

                              *               *    *      *    *         *   
        405 TGCCTTTATTTAGATTT-TAGGAACTTTAATTAGTTTAGGGTTCTCTAAATTGTTGAG-AATCGA
          1 TGCCTTTATTTAG-TTTCCAGGAAC-TTAATTAGCTTAGAGTTCTCCAAATCGTTGAGAAAACGA

               **                  *   *   *  *                   *          
        468 AGTGTCG-ATCAATTTGATTTGTGTGATATGGAAGACGACGATGGGCAAGACTATGTAG-ATAAA
         64 AGTCACGAATCAATTTGATTTGTATGAAATGAAAAACGACGATGGGCAAGACTAGGT-GCATAAA

            *            
        531 TCTAGGGTTTTGA
        128 CCTAGGGTTTTGA

        544 ATGTGCCGCC


Statistics
Matches: 116,  Mismatches: 20, Indels: 7
        0.81            0.14        0.05

Matches are distributed among these distances:
 156   57  0.49
 157   29  0.25
 158   30  0.26

ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35


Consensus pattern (157 bp):   
TGCCTTTATTTAGTTTCCAGGAACTTAATTAGCTTAGAGTTCTCCAAATCGTTGAGAAAACGAAG
TCACGAATCAATTTGATTTGTATGAAATGAAAAACGACGATGGGCAAGACTAGGTGCATAAACCT
AGGGTTTTGATTTGAATTTATTAGCGT
Done.