Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00108.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 541

Length: 902
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31


Found at i:735 original size:2 final size:2

Alignment explanation


    Indices: 728--768  Score: 55
    Period size: 2  Copynumber: 20.5  Consensus size: 2

        718 CCAATGTAAC

                              *     *         *                          
        728 AT AT AT AT AT AT GT AT GT AT AT AC AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        769 GATGAGGCTT


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46


Consensus pattern (2 bp):   
AT

Done.