Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00348.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 596

Length: 994
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:802 original size:12 final size:12

Alignment explanation


    Indices: 785--815  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        775 TTTGGATGCC

                        
        785 GAGAAAATGAAA
          1 GAGAAAATGAAA

                        
        797 GAGAAAATGAAA
          1 GAGAAAATGAAA

                   
        809 GAGAAAA
          1 GAGAAAA

        816 CTCAAATCAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06


Consensus pattern (12 bp):   
GAGAAAATGAAA
Done.