Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00375.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3638
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:1621 original size:20 final size:20

Alignment explanation


    Indices: 1592--1633  Score: 66
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       1582 CCGCTGTTGC

                           *    
       1592 TTTAGCAAAAGTTAATGAGG
          1 TTTAGCAAAAGTTAACGAGG

                 *              
       1612 TTTAGTAAAAGTTAACGAGG
          1 TTTAGCAAAAGTTAACGAGG

              
       1632 TT
          1 TT

       1634 GAAGAAATTC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33


Consensus pattern (20 bp):   
TTTAGCAAAAGTTAACGAGG
Done.