Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00376.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1325
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34


Found at i:347 original size:13 final size:15

Alignment explanation


    Indices: 312--350  Score: 55
    Period size: 16  Copynumber: 2.7  Consensus size: 15

        302 TATCTTTATC

                            
        312 TTATTTATATTCTATT
          1 TTATTTAT-TTCTATT

                           
        328 TTATTTATTTCT-TT
          1 TTATTTATTTCTATT

                      
        342 TT-TTTATTT
          1 TTATTTATTT

        351 ATCCATCTTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  13    7  0.30
  14    4  0.17
  15    4  0.17
  16    8  0.35

ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77


Consensus pattern (15 bp):   
TTATTTATTTCTATT
Done.