Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00386.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4102
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31


Found at i:1583 original size:14 final size:15

Alignment explanation


    Indices: 1564--1594  Score: 55
    Period size: 14  Copynumber: 2.1  Consensus size: 15

       1554 CAAGAAATGG

                           
       1564 GAAGAAAAAT-TGTT
          1 GAAGAAAAATGTGTT

                           
       1578 GAAGAAAAATGTGTT
          1 GAAGAAAAATGTGTT

              
       1593 GA
          1 GA

       1595 TGAACTTGGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14   10  0.62
  15    6  0.38

ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26


Consensus pattern (15 bp):   
GAAGAAAAATGTGTT

Done.