Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00390.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3729
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:2923 original size:39 final size:39

Alignment explanation


    Indices: 2867--2949  Score: 130
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       2857 TCAAGGAAAA

                               *                   
       2867 GGTTTGATATTACTATGCCTGGAAGTGAAATCCCAGAAT
          1 GGTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAAT

                        *              *    *      
       2906 GGTTTGATATTATTATGCCCGGAAGTGGAATCTCAGAAT
          1 GGTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAAT

                 
       2945 GGTTT
          1 GGTTT

       2950 AGCCAACAAA


Statistics
Matches: 40,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  39   40  1.00

ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34


Consensus pattern (39 bp):   
GGTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAAT
Done.