Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00392.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2406
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37


Found at i:139 original size:6 final size:6

Alignment explanation


    Indices: 123--153  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        113 ACCCATACGA

                   *                            
        123 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT T
          1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T

        154 GGTTTTGAAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (6 bp):   
TCCCTT

Done.