Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00111.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4242
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26


Found at i:3824 original size:27 final size:27

Alignment explanation


    Indices: 3780--3890  Score: 132
    Period size: 27  Copynumber: 4.1  Consensus size: 27

       3770 TATTTCGGAA

                   *                   
       3780 ACCAACAGAGGTACGTCGATACAAGGG
          1 ACCAACAAAGGTACGTCGATACAAGGG

             *           *      *    * 
       3807 ATCAACAAAGGTATGTCGATCCAAGAG
          1 ACCAACAAAGGTACGTCGATACAAGGG

                   *            * *    
       3834 ACCAACAGAGGTACGTCGATCCGAGGG
          1 ACCAACAAAGGTACGTCGATACAAGGG

                         *  *          
       3861 ACCAACAAAGGTATGTTGATACAAGGG
          1 ACCAACAAAGGTACGTCGATACAAGGG

               
       3888 ACC
          1 ACC

       3891 GTGATTTTCA


Statistics
Matches: 69,  Mismatches: 15, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  27   69  1.00

ACGTcount: A:0.37, C:0.22, G:0.27, T:0.14


Consensus pattern (27 bp):   
ACCAACAAAGGTACGTCGATACAAGGG

Found at i:3842 original size:54 final size:54

Alignment explanation


    Indices: 3780--3890  Score: 168
    Period size: 54  Copynumber: 2.1  Consensus size: 54

       3770 TATTTCGGAA

                                        *                  *      
       3780 ACCAACAGAGGTACGTCGATACAAGGGATCAACAAAGGTATGTCGATCCAAGAG
          1 ACCAACAGAGGTACGTCGATACAAGGGACCAACAAAGGTATGTCGATACAAGAG

                                * *                    *        * 
       3834 ACCAACAGAGGTACGTCGATCCGAGGGACCAACAAAGGTATGTTGATACAAGGG
          1 ACCAACAGAGGTACGTCGATACAAGGGACCAACAAAGGTATGTCGATACAAGAG

               
       3888 ACC
          1 ACC

       3891 GTGATTTTCA


Statistics
Matches: 51,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  54   51  1.00

ACGTcount: A:0.37, C:0.22, G:0.27, T:0.14


Consensus pattern (54 bp):   
ACCAACAGAGGTACGTCGATACAAGGGACCAACAAAGGTATGTCGATACAAGAG
Done.