Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00399.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 993

Length: 1655
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:183 original size:7 final size:7

Alignment explanation


    Indices: 173--212  Score: 55
    Period size: 7  Copynumber: 5.9  Consensus size: 7

        163 TTTGATCATC

                   
        173 TGTTTTT
          1 TGTTTTT

                   
        180 TGTTTTT
          1 TGTTTTT

                   
        187 TGTTTTT
          1 TGTTTTT

                   
        194 TG-TTTT
          1 TGTTTTT

            * *    
        200 GGGTTTT
          1 TGTTTTT

                  
        207 TGTTTT
          1 TGTTTT

        213 CTGGGTTTGT


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
   6    5  0.17
   7   24  0.83

ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80


Consensus pattern (7 bp):   
TGTTTTT

Found at i:199 original size:13 final size:13

Alignment explanation


    Indices: 173--212  Score: 53
    Period size: 13  Copynumber: 3.0  Consensus size: 13

        163 TTTGATCATC

                          
        173 TGTTTTTTGTTTTT
          1 TGTTTTTTG-TTTT

                         
        187 TGTTTTTTGTTTT
          1 TGTTTTTTGTTTT

            * *          
        200 GGGTTTTTGTTTT
          1 TGTTTTTTGTTTT

        213 CTGGGTTTGT


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  13   15  0.62
  14    9  0.38

ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80


Consensus pattern (13 bp):   
TGTTTTTTGTTTT
Done.