Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00409.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29


Found at i:1015 original size:39 final size:39

Alignment explanation


    Indices: 972--1047  Score: 125
    Period size: 39  Copynumber: 1.9  Consensus size: 39

        962 TATAGGTAAC

                                                   
        972 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
          1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT

                     *       *    *              
       1011 GAGTTTAACTGAGTTTCGAGTTTGGATCGAGGAACTG
          1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTG

       1048 TTTAGCAGGT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  39   34  1.00

ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30


Consensus pattern (39 bp):   
GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
Done.