Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00112.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 592

Length: 988
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:816 original size:19 final size:19

Alignment explanation


    Indices: 759--816  Score: 50
    Period size: 19  Copynumber: 3.1  Consensus size: 19

        749 TATCTCTTCT

                               
        759 TTACTATACTGCTAACTCA
          1 TTACTATACTGCTAACTCA

                   *        *     
        778 -TAC-ATTCT-CTATCTCTTCA
          1 TTACTATACTGCTA--AC-TCA

                               
        797 TTACTATACTGCTAACTCA
          1 TTACTATACTGCTAACTCA

             
        816 T
          1 T

        817 GTCAATATAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 12
        0.64            0.09        0.27

Matches are distributed among these distances:
  16    3  0.10
  17    4  0.14
  18    4  0.14
  19    7  0.24
  20    4  0.14
  21    4  0.14
  22    3  0.10

ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41


Consensus pattern (19 bp):   
TTACTATACTGCTAACTCA
Done.