Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00413.N6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1792
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28


Found at i:1550 original size:2 final size:2

Alignment explanation


    Indices: 1543--1579  Score: 56
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       1533 TTTTGTAGGT

                                  *             *                  
       1543 TA TA TA TA TA TA TA TT TA TA TA TA AA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1580 GAGTTATATT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Done.