Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00112.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Found at i:962 original size:19 final size:19

Alignment explanation


    Indices: 905--962  Score: 50
    Period size: 19  Copynumber: 3.1  Consensus size: 19

        895 TATCTCTTCT

                               
        905 TTACTATACTGCTAACTCA
          1 TTACTATACTGCTAACTCA

                   *        *     
        924 -TAC-ATTCT-CTATCTCTTCA
          1 TTACTATACTGCTA--AC-TCA

                               
        943 TTACTATACTGCTAACTCA
          1 TTACTATACTGCTAACTCA

             
        962 T
          1 T

        963 GTCAATATAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 12
        0.64            0.09        0.27

Matches are distributed among these distances:
  16    3  0.10
  17    4  0.14
  18    4  0.14
  19    7  0.24
  20    4  0.14
  21    4  0.14
  22    3  0.10

ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41


Consensus pattern (19 bp):   
TTACTATACTGCTAACTCA
Done.