Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00424.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5210
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Found at i:4623 original size:153 final size:153
Alignment explanation
Indices: 4326--4627 Score: 390
Period size: 153 Copynumber: 2.0 Consensus size: 153
4316 TCTAAGGGAC
* * * * * *
4326 TGCAATCTTTGTGAAGGAGATATTCCACGTGATATTTCTGGTCTATCCTCTTTGACAGATCTTGA
1 TGCAATCTTGGTGAAGCAGATATTCAAAGTGATATTTCTGGTCTATCCTCTTTGACACATCTTAA
* * * * **
4391 TCTTAGTGGTAACAATTTCAGCAGCATACCTGCATCTCTTATTGGACTCTCGAAGCTTGGGTTTC
66 TCTTAGTAGTAACAATTTCAGCAGCATACCTGCATCTCTTACTAGACTCTCCAAGCTTCAGTTTC
*
4456 TTACGTTGTCAAATTGCAACATG
131 TTACATTGTCAAATTGCAACATG
* * ***
4479 TGCACTCTTGGTGAAGCAGATATTCAAAGTTATATTTCTGGTCTATCCTCTTTGGTTCATCTTAA
1 TGCAATCTTGGTGAAGCAGATATTCAAAGTGATATTTCTGGTCTATCCTCTTTGACACATCTTAA
* * *
4544 TCTTAGTATTAACAATTTCATCAGCATACCTGCATCTCTTACTAGACTTTCCAAGCTTCAGTTTC
66 TCTTAGTAGTAACAATTTCAGCAGCATACCTGCATCTCTTACTAGACTCTCCAAGCTTCAGTTTC
*
4609 TTGCATTGGT-AAATTGCAA
131 TTACATT-GTCAAATTGCAA
4628 GATGCTTAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
153 124 0.98
154 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (153 bp):
TGCAATCTTGGTGAAGCAGATATTCAAAGTGATATTTCTGGTCTATCCTCTTTGACACATCTTAA
TCTTAGTAGTAACAATTTCAGCAGCATACCTGCATCTCTTACTAGACTCTCCAAGCTTCAGTTTC
TTACATTGTCAAATTGCAACATG
Done.