Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00427.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 380

Length: 634
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.31


Found at i:370 original size:26 final size:25

Alignment explanation


    Indices: 331--466  Score: 209
    Period size: 26  Copynumber: 5.2  Consensus size: 25

        321 TGATACAAAT

                                   *  
        331 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAAT-GGTTAGGTAAATGTTTCA

                                      
        357 TGATAATGGATTAGGTAAATGTTTCA
          1 TGATAATGG-TTAGGTAAATGTTTCA

                                   *  
        383 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAAT-GGTTAGGTAAATGTTTCA

                                      
        409 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAAT-GGTTAGGTAAATGTTTCA

                                      
        435 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAAT-GGTTAGGTAAATGTTTCA

                  
        461 TGATAA
          1 TGATAA

        467 GAATATCATG


Statistics
Matches: 104,  Mismatches: 4, Indels: 4
        0.93            0.04        0.04

Matches are distributed among these distances:
  25    2  0.02
  26  100  0.96
  27    2  0.02

ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37


Consensus pattern (25 bp):   
TGATAATGGTTAGGTAAATGTTTCA

Found at i:388 original size:52 final size:52

Alignment explanation


    Indices: 331--466  Score: 245
    Period size: 52  Copynumber: 2.6  Consensus size: 52

        321 TGATACAAAT

                                                                
        331 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA

                                               *                
        383 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA

                   *               *        
        435 TGATAATGGGTTAGGTAAATGTTTCATGATAA
          1 TGATAATAGGTTAGGTAAATGTTCCATGATAA

        467 GAATATCATG


Statistics
Matches: 81,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  52   81  1.00

ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37


Consensus pattern (52 bp):   
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
Done.