Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00431.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4962
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:3497 original size:12 final size:12

Alignment explanation


    Indices: 3480--3505  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       3470 TGAATGCGAT

                        
       3480 GAGATGTCTTTC
          1 GAGATGTCTTTC

                        
       3492 GAGATGTCTTTC
          1 GAGATGTCTTTC

              
       3504 GA
          1 GA

       3506 AGGCACACTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.19, C:0.15, G:0.27, T:0.38


Consensus pattern (12 bp):   
GAGATGTCTTTC
Done.