Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00435.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3317
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:3157 original size:16 final size:16

Alignment explanation


    Indices: 3132--3162  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       3122 CACCACTTGG

                 *          
       3132 ATTGTTTGCCATTAAA
          1 ATTGTCTGCCATTAAA

                           
       3148 ATTGTCTGCCATTAA
          1 ATTGTCTGCCATTAA

       3163 TCATAATGTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42


Consensus pattern (16 bp):   
ATTGTCTGCCATTAAA
Done.