Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00441.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4215
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:1685 original size:14 final size:15

Alignment explanation


    Indices: 1666--1694  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1656 CAAGAAATGG

                           
       1666 GAAGAAAAAT-TGTT
          1 GAAGAAAAATGTGTT

                           
       1680 GAAGAAAAATGTGTT
          1 GAAGAAAAATGTGTT

       1695 AATGAACCTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28


Consensus pattern (15 bp):   
GAAGAAAAATGTGTT
Done.