Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00447.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 570

Length: 951
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29


Found at i:720 original size:20 final size:20

Alignment explanation


    Indices: 695--734  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        685 GCGACCAATT

                                
        695 CTCGGTTGTCATGGTCGAGC
          1 CTCGGTTGTCATGGTCGAGC

                                
        715 CTCGGTTGTCATGGTCGAGC
          1 CTCGGTTGTCATGGTCGAGC

        735 ATTCTCAATC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.10, C:0.25, G:0.35, T:0.30


Consensus pattern (20 bp):   
CTCGGTTGTCATGGTCGAGC
Done.