Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00470.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4780
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Found at i:1296 original size:69 final size:69
Alignment explanation
Indices: 1223--1596 Score: 342
Period size: 69 Copynumber: 5.5 Consensus size: 69
1213 TCGTTTTCTT
* * * * * * *
1223 CAAGAAAAAGAGCCCCCTGTTGCTGGACATGAAGAACCGTCTGAAATGCTAAATAAACGACCTCT
1 CAAGAAAAAGAGCCCCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTCG
1288 ACTC
66 ACTC
* * * * * *
1292 CAAGAAAAAGAGCCACC-TGTCGCTGGACACGAAGAGCCGTCAGAAACGCTAGATCAACAACCTC
1 CAAGAAAAAGAGCC-CCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTC
**
1356 TCCTC
65 GACTC
* * * ** *
1361 CAAGGAAAAGAGCCACATGTTCCTGGAGGTGAAGAG-C--CGGAAATGCTAGATAAACAAGGTCG
1 CAAGAAAAAGAGCCCCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTCG
**
1423 AAAC
66 ACTC
* * * * * * *
1427 CAAGAAAATGAGCTCCATGTTACCGGACATGAAGAGCCATCGGAAATGCTAAATAAACGACGTCG
1 CAAGAAAAAGAGCCCCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTCG
1492 ACTC
66 ACTC
* * * * * * * *
1496 CAAGAAAATGAGCTCCATGTTGATGGACATGAAGAGCCCTCGGAAATACTAGATCAACAGCGTCA
1 CAAGAAAAAGAGCCCCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTCG
1561 ACTC
66 ACTC
* * *
1565 CAAGAAAATGAGCTCCATATTGCTGGACATGA
1 CAAGAAAAAGAGCCCCATGTTGCTGGACATGA
1597 GCTAGATAAA
Statistics
Matches: 250, Mismatches: 50, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
66 48 0.19
67 1 0.00
68 2 0.01
69 197 0.79
70 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (69 bp):
CAAGAAAAAGAGCCCCATGTTGCTGGACATGAAGAGCCGTCGGAAATGCTAGATAAACAACGTCG
ACTC
Found at i:1662 original size:123 final size:123
Alignment explanation
Indices: 1474--1721 Score: 304
Period size: 123 Copynumber: 2.0 Consensus size: 123
1464 CATCGGAAAT
** ** * *
1474 GCTAAATAAACGACGTCGACTCCAAGAAAATGAGCTCCATGTTGATGGACATGAAGAGCCCTCGG
1 GCTAAATAAACGACGTCGACTCCAAGAAAACAAAATCCATGTTGACGGACATGAAGAGCCATCGG
1539 AAATACTAGATC-AAC-AGCGTCAACTCCAAGAAAATGAGCTCCATA-TTGCTGGACATGA
66 AAATACTAGA-CAAACGA-CGTCAACTCCAAGAAAATGAGCTCCA-AGTTGCTGGACATGA
* * * **
1597 GCTAGATAAACTAGGTCGACTCCAAGAAAACAAAATCCATGTTTCCGGACATGAAGAGCCATCGG
1 GCTAAATAAACGACGTCGACTCCAAGAAAACAAAATCCATGTTGACGGACATGAAGAGCCATCGG
** * * *
1662 AAATGTTAGACAAACGACGTCGACTCCTAGAAAATGAGCTCCAAGTTGGTGGACATGA
66 AAATACTAGACAAACGACGTCAACTCCAAGAAAATGAGCTCCAAGTTGCTGGACATGA
1720 GC
1 GC
1722 AGCCCTTAGA
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
122 2 0.02
123 103 0.97
124 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (123 bp):
GCTAAATAAACGACGTCGACTCCAAGAAAACAAAATCCATGTTGACGGACATGAAGAGCCATCGG
AAATACTAGACAAACGACGTCAACTCCAAGAAAATGAGCTCCAAGTTGCTGGACATGA
Found at i:1759 original size:192 final size:192
Alignment explanation
Indices: 1405--1762 Score: 520
Period size: 192 Copynumber: 1.9 Consensus size: 192
1395 AGCCGGAAAT
** **
1405 GCTAGATAAACAAGGTCGAAACCAAGAAAATGAGCTCCATGTTACCGGACATGAAGAGCCATCGG
1 GCTAGATAAACAAGGTCGAAACCAAGAAAACAAAATCCATGTTACCGGACATGAAGAGCCATCGG
* *
1470 AAATGCTAAATAAACGACGTCGACTCCAAGAAAATGAGCTCCATGTTGATGGACATGAAGAGCCC
66 AAATGCTAAACAAACGACGTCGACTCCAAGAAAATGAGCTCCAAGTTGATGGACATGAAGAGCCC
* *
1535 TCGGAAATACTAGATCAACAGCGTCAACTCCAAGAAAATGAGCTCCATATTGCTGGACATGA
131 TCAGAAATACTAGATAAACAGCGTCAACTCCAAGAAAATGAGCTCCATATTGCTGGACATGA
* ** *
1597 GCTAGATAAACTAGGTCGACTCCAAGAAAACAAAATCCATGTTTCCGGACATGAAGAGCCATCGG
1 GCTAGATAAACAAGGTCGAAACCAAGAAAACAAAATCCATGTTACCGGACATGAAGAGCCATCGG
* * * *
1662 AAATGTTAGACAAACGACGTCGACTCCTAGAAAATGAGCTCCAAGTTGGTGGACATG-AGCAGCC
66 AAATGCTAAACAAACGACGTCGACTCCAAGAAAATGAGCTCCAAGTTGATGGACATGAAG-AGCC
* * * *
1726 CTTAGAAATGCTAGATAAACGGCGTCGACTCCAAGAA
130 CTCAGAAATACTAGATAAACAGCGTCAACTCCAAGAA
1763 CATATCGATG
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
191 2 0.01
192 143 0.99
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (192 bp):
GCTAGATAAACAAGGTCGAAACCAAGAAAACAAAATCCATGTTACCGGACATGAAGAGCCATCGG
AAATGCTAAACAAACGACGTCGACTCCAAGAAAATGAGCTCCAAGTTGATGGACATGAAGAGCCC
TCAGAAATACTAGATAAACAGCGTCAACTCCAAGAAAATGAGCTCCATATTGCTGGACATGA
Found at i:1815 original size:129 final size:128
Alignment explanation
Indices: 1643--2458 Score: 1229
Period size: 129 Copynumber: 6.3 Consensus size: 128
1633 CCATGTTTCC
* * * * * * *
1643 GGACATGAAGAGCCATCGGAAATGTTAGACAAACGACGTCGACTCCTAGA-AAATGAGCTCCAAG
1 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAA-GAACTCCAAG
* * * *
1707 TTGGTGGACATGAGCAGCCCTTAGAAATGCTAGATAAACGGCGTCGACTCCAAGAACATATCGAT
65 TTGATGGACATGAG-AGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
* * *
1772 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGCCGACTCCAACAAAAAGAACTCCAAGT
1 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
** * *
1837 TGATGGACAAAAAGCGCCCTCAAAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
66 TGATGGAC-ATGAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
** *
1901 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAGGAGAAAGAACTCCAAGT
1 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
* *
1966 TGATGGACATGGAGAGCCCTCAGAAATGCTGGATAAACAGCGTCAACTCAAAGAACATATCGAT
66 TGATGGACAT-GAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
2030 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
1 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
* *
2095 TGATGGACATGAAAAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGAT
66 TGATGGACATG-AGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
* *
2159 GGACACAAAGAGCCCTCGAAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
1 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
2224 TGATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
66 TGATGGACATG-AGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
* * *
2288 GGACACGAAGAGCCTTCGGAAATACTAGATAAAAGACGTCAACTCCAAGAGAAAGAACTCCAAGT
1 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
* *
2353 TGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTTAAAGAACATATCGAT
66 TGATGGACATG-AGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
* * * * *
2417 CGACACGAAGAGACCTCGAAAATGCTAGATAAACGGCGTCGA
1 GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGA
2459 ATCAAACAAC
Statistics
Matches: 628, Mismatches: 55, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
128 2 0.00
129 620 0.99
130 6 0.01
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.16
Consensus pattern (128 bp):
GGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
TGATGGACATGAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGAT
Found at i:1870 original size:69 final size:69
Alignment explanation
Indices: 1769--3158 Score: 911
Period size: 69 Copynumber: 21.5 Consensus size: 69
1759 AGAACATATC
* * *
1769 GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGCCGACTCCAACAAAAAGAACTCCA
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
1834 AGTT
66 AGTT
** * * * * * *
1838 GATGGACAAAAAGCGCCCTCAAAAATGCTAGATAAACGGCGTCAACT-CAA-AG-AA-CA-T---
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
*
1895 A-TC
66 AGTT
* **
1898 GATGGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAGGAGAAAGAACTCCA
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
1963 AGTT
66 AGTT
* * * * *
1967 GATGGACATGGAGAGCCCTCAGAAATGCTGGATAAACAG-CGTCAACT-CAA-AG-AA-CA-T--
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAA-AGACGTCGACTCCAACAGAAAGAACTCC
*
2024 -A-TC
65 AAGTT
* *
2027 GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCA
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
2092 AGTT
66 AGTT
* * * * *
2096 GATGGACATGAAAAGCCCTCAGAAATGCTAGATAAACGGCGTCGACT-CAA-AG-AA-CA-T---
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
*
2153 A-TC
66 AGTT
* *
2156 GATGGACACAAAGAGCCCTC-GAAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCC
1 GATGGACACGAAGAGCCCTCAG-AAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCC
2220 AAGTT
65 AAGTT
* * * * *
2225 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACT-CAA-AG-AA-CA-T---
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
*
2282 A-TC
66 AGTT
* * * * *
2285 GATGGACACGAAGAGCCTTCGGAAATACTAGATAAAAGACGTCAACTCCAAGAGAAAGAACTCCA
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
2350 AGTT
66 AGTT
* * * **
2354 GATAGACATGAAGAGCCCTCAGAAATGCTAGAT--AA-ACGGCG--T-CAACTTAAAGAA---CA
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
*
2410 TA-TC
66 -AGTT
* * * * * * *
2414 GATCGACACGAAGAGACCTC-GAAAATGCTAGATAAACGGCGTCGAAT-CAA-A-CAA-CA-T--
1 GATGGACACGAAGAGCCCTCAG-AAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCC
*
2471 -A-TA
65 AAGTT
* * * *
2474 GATGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGA-AAATGAGCTCC
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAA-GAACTCC
2538 AAGTT
65 AAGTT
* * * *
2543 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACT-CAA-AGAACA-TA-T-C
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAA-AGAACTCC
*
2603 --GAT
65 AAGTT
* * * * *
2606 -AT--ACACGAAGAGCCCTCGGAAATTCTAGATAAAAGACGTCTACTCCAAGAGAAAGAACTACA
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
*
2668 TGTT
66 AGTT
* * * * *
2672 GATGGACATGAAAAGCCCTCAGAAATGCTAGATAAACGGCGTCGACT-CAA-AG-AA-CA-T---
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
*
2729 A-TC
66 AGTT
* * * * *
2732 GATGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACATCGACTACAAGAGAAAGAACTCCA
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
2797 AGTT
66 AGTT
* * * *
2801 GATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGACGCCGACT-CAA-AGAACA-TA-T-C
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAA-AGAACTCC
2861 -A---
65 AAGTT
* *
2862 -ATGGACACGAAGAG-CCTCGGAAATGCTAGATAAAAGACGTCGACT-C-A-AGGAA-AA-T---
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
2917 -GTT
66 AGTT
* * * * * *
2920 GATGGACATGAAGAGCCCTCAAAAATTCTAGATAAAAGACATCGACTCCAAGA-AAATGATCTCC
1 GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAA-GAACTCC
2984 AAGTT
65 AAGTT
* * * *
2989 GACGGACATGAAGAGCCCTC-GAAAATGCTAGATAAAAGACGTCGACTCCAAGA-AAATGAGCTC
1 GATGGACACGAAGAGCCCTCAG-AAATGCTAGATAAAAGACGTCGACTCCAACAGAAA-GAACTC
*
3052 CATGTT
64 CAAGTT
* * * * ** * * * *
3058 GCTAGACAC-AGAGAACTCTTTGAAATGCTATATAAACGACGTCGACTCCAA-AAAAATGAGCTC
1 GATGGACACGA-AGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAA-GAACTC
*
3121 CATGTT
64 CAAGTT
* *
3127 GTTAGACATC-AAGAGCCCTC-GAAAATGCTAGA
1 GATGGACA-CGAAGAGCCCTCAG-AAATGCTAGA
3159 AAATGAGCTT
Statistics
Matches: 1055, Mismatches: 165, Indels: 202
0.74 0.12 0.14
Matches are distributed among these distances:
57 3 0.00
58 4 0.00
59 46 0.04
60 356 0.34
61 28 0.03
62 25 0.02
63 29 0.03
64 14 0.01
65 18 0.02
66 18 0.02
67 19 0.02
68 32 0.03
69 457 0.43
70 6 0.01
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (69 bp):
GATGGACACGAAGAGCCCTCAGAAATGCTAGATAAAAGACGTCGACTCCAACAGAAAGAACTCCA
AGTT
Found at i:2500 original size:447 final size:446
Alignment explanation
Indices: 1989--3042 Score: 1628
Period size: 447 Copynumber: 2.4 Consensus size: 446
1979 GAGCCCTCAG
* * * *
1989 AAATGCTGGATAAACAGCGTC-AACTCAAAGAACATATCGATGGACACGAAGAGCCCTCGGAAAT
1 AAATGCTAGATAAACGGCGTCGAA-TCAAAGAACATATAGATGGACATGAAGAGCCCTCGGAAAT
*
2053 GCTAGATAAAAGACGTCGACTCCAAGAGAAA-GAACTCCAAGTTGATGGACATGAAAAGCCCTCA
65 GCTAGATAAAAGACGTCGACTCCAAGA-AAATGAACTCCAAGTTGATGGACATGAAGAGCCCTCA
*
2117 GAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACACAAAGAGCCCTCGAAAAT
129 GAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATAGACACAAAGAGCCCTCGAAAAT
* *
2182 GCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAG
194 GCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTACAAGTTGATGGACATGAAAAGCCCTCAG
*
2247 AAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATGGACACGAAGAGCCTTCGGAAATA
259 AAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATGGACACGAAGAGCCCTCGGAAATA
* *
2312 CTAGATAAAAGACGTCAACTCCAAGAGAAAGAACTCCAAGTTGATAGACATGAAGAGCCCTCAGA
324 CTAGATAAAAGACATCAACTACAAGAGAAAGAACTCCAAGTTGATAGACATGAAGAGCCCTCAGA
* * * *
2377 AATGCTAGATAAACGGCGTCAACTTAAAGAACATATCGATCGACACGAAGAGACCTCGA
389 AATGCTAGATAAACGACGCCAACTCAAAGAACATATCAATCGACACGAAGAG-CCTCGA
*
2436 AAATGCTAGATAAACGGCGTCGAATCAAACAACATATAGATGGACATGAAGAGCCCTCGGAAATG
1 AAATGCTAGATAAACGGCGTCGAATCAAAGAACATATAGATGGACATGAAGAGCCCTCGGAAATG
*
2501 CTAGATAAAAGACGTCGACTCCAAGAAAATGAGCTCCAAGTTGATGGACATGAAGAGCCCTCAGA
66 CTAGATAAAAGACGTCGACTCCAAGAAAATGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGA
* * * *
2566 AATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATATACACGAAGAGCCCTCGGAAATTC
131 AATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATAGACACAAAGAGCCCTCGAAAATGC
* *
2631 TAGATAAAAGACGTCTACTCCAAGAGAAAGAACTACATGTTGATGGACATGAAAAGCCCTCAGAA
196 TAGATAAAAGACGTCGACTCCAAGAGAAAGAACTACAAGTTGATGGACATGAAAAGCCCTCAGAA
* * *
2696 ATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACATGAAGAGCCCTCGGAAATGCT
261 ATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATGGACACGAAGAGCCCTCGGAAATACT
* *
2761 AGATAAAAGACATCGACTACAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGAAA
326 AGATAAAAGACATCAACTACAAGAGAAAGAACTCCAAGTTGATAGACATGAAGAGCCCTCAGAAA
* * *
2826 TGCTAGATAAACGACGCCGACTCAAAGAACATATCAATGGACACGAAGAGCCTCGG
391 TGCTAGATAAACGACGCCAACTCAAAGAACATATCAATCGACACGAAGAGCCTCGA
* * * * * * * ** *
2882 AAATGCTAGATAAAAGACGTCGACTCAAGGAAAATGTTGATGGACATGAAGAGCCCTCAAAAATT
1 AAATGCTAGATAAACGGCGTCGAATCAAAGAACATATAGATGGACATGAAGAGCCCTCGGAAATG
* * *
2947 CTAGATAAAAGACATCGACTCCAAGAAAATGATCTCCAAGTTGACGGACATGAAGAGCCCTC-GA
66 CTAGATAAAAGACGTCGACTCCAAGAAAATGAACTCCAAGTTGATGGACATGAAGAGCCCTCAG-
* * *
3011 AAATGCTAGATAAAAGACGTCGACTCCAAGAA
130 AAATGCTAGATAAACGGCGTCGACTCAAAGAA
3043 AATGAGCTCC
Statistics
Matches: 556, Mismatches: 48, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
445 1 0.00
446 150 0.27
447 403 0.72
448 2 0.00
ACGTcount: A:0.41, C:0.21, G:0.22, T:0.17
Consensus pattern (446 bp):
AAATGCTAGATAAACGGCGTCGAATCAAAGAACATATAGATGGACATGAAGAGCCCTCGGAAATG
CTAGATAAAAGACGTCGACTCCAAGAAAATGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGA
AATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATAGACACAAAGAGCCCTCGAAAATGC
TAGATAAAAGACGTCGACTCCAAGAGAAAGAACTACAAGTTGATGGACATGAAAAGCCCTCAGAA
ATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATGGACACGAAGAGCCCTCGGAAATACT
AGATAAAAGACATCAACTACAAGAGAAAGAACTCCAAGTTGATAGACATGAAGAGCCCTCAGAAA
TGCTAGATAAACGACGCCAACTCAAAGAACATATCAATCGACACGAAGAGCCTCGA
Found at i:2503 original size:318 final size:318
Alignment explanation
Indices: 2118--3042 Score: 1167
Period size: 318 Copynumber: 2.9 Consensus size: 318
2108 AAGCCCTCAG
* * ** *
2118 AAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACACAAAGAGCCCTCGAAAATG
1 AAATGCTAGATAAACGGCGTCGACTCAAAAAACATATAGATGGACATGAAGAGCCCTCGGAAATG
2183 CTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGA
66 CTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGA
* * *
2248 AATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATGGACACGAAGAGCCTTCGGAAATAC
131 AATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACACGAAGAGCCCTCGGAAATTC
*
2313 TAGATAAAAGACGTCAACTCCAAGAGAAAGAACTCCAAGTTGATAGACATGAAGAGCCCTCAGAA
196 TAGATAAAAGACGTCAACTCCAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGAA
*
2378 ATGCTAGATAAACGGCGTCAACTTAAAGAACATATCGATCGACACGAAGAGACCTCGA
261 ATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATCGACACGAAGAGACCTCGA
* *
2436 AAATGCTAGATAAACGGCGTCGAATCAAACAACATATAGATGGACATGAAGAGCCCTCGGAAATG
1 AAATGCTAGATAAACGGCGTCGACTCAAAAAACATATAGATGGACATGAAGAGCCCTCGGAAATG
*
2501 CTAGATAAAAGACGTCGACTCCAAGA-AAATGAGCTCCAAGTTGATGGACATGAAGAGCCCTCAG
66 CTAGATAAAAGACGTCGACTCCAAGAGAAA-GAACTCCAAGTTGATGGACATGAAGAGCCCTCAG
**
2565 AAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATATACACGAAGAGCCCTCGGAAATT
130 AAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACACGAAGAGCCCTCGGAAATT
* * * *
2630 CTAGATAAAAGACGTCTACTCCAAGAGAAAGAACTACATGTTGATGGACATGAAAAGCCCTCAGA
195 CTAGATAAAAGACGTCAACTCCAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGA
* * * * *
2695 AATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACATGAAGAGCCCTCGG
260 AATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATCGACACGAAGAGACCTCGA
* * * * *
2754 AAATGCTAGATAAAAGACATCGACTACAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCC
1 AAATGCTAGATAAACGGCGTCGACT-CAA-A-AAA-CA-T---A-TAGATGGACATGAAGAGCCC
* * * * *
2819 TCAGAAATGCTAGATAAACGACGCCGACT-CAA-AGAACA-TA-T-C-A----ATGGACACGAAG
57 TCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAA-AGAACTCCAAGTTGATGGACATGAAG
* * * * * * * *
2874 AG-CCTCGGAAATGCTAGATAAAAGACGTCGACTCAAGGAAAATGTTGATGGACATGAAGAGCCC
121 AGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACACGAAGAGCCC
** * * * *
2938 TCAAAAATTCTAGATAAAAGACATCGACTCCAAGA-AAATGATCTCCAAGTTGACGGACATGAAG
186 TCGGAAATTCTAGATAAAAGACGTCAACTCCAAGAGAAA-GAACTCCAAGTTGATGGACATGAAG
* * * *
3002 AGCCCTC-GAAAATGCTAGATAAAAGACGTCGACTCCAAGAA
250 AGCCCTCAG-AAATGCTAGATAAACGGCGTCAACTCAAAGAA
3043 AATGAGCTCC
Statistics
Matches: 535, Mismatches: 58, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
316 4 0.01
317 142 0.27
318 325 0.61
319 3 0.01
320 1 0.00
321 2 0.00
322 2 0.00
323 2 0.00
324 1 0.00
325 1 0.00
326 6 0.01
327 46 0.09
ACGTcount: A:0.41, C:0.21, G:0.22, T:0.17
Consensus pattern (318 bp):
AAATGCTAGATAAACGGCGTCGACTCAAAAAACATATAGATGGACATGAAGAGCCCTCGGAAATG
CTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGA
AATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACACGAAGAGCCCTCGGAAATTC
TAGATAAAAGACGTCAACTCCAAGAGAAAGAACTCCAAGTTGATGGACATGAAGAGCCCTCAGAA
ATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGATCGACACGAAGAGACCTCGA
Found at i:2549 original size:258 final size:261
Alignment explanation
Indices: 1643--3158 Score: 1310
Period size: 258 Copynumber: 5.9 Consensus size: 261
1633 CCATGTTTCC
* * ** * * * * *
1643 GGACATGAAGAGCCATCGGAAATGTTAGACAAACGACGTCGACTCCTAGAAAATGAGCTCCAAGT
1 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAAGAAAA-GAACT-C-AGT
* ** * * *
1708 TGGTGGACATG-AGCAGCCCTTAGAAATGCTAGATAAACGGCGTCGACTCCAAGAACAT-A-T-C
63 TGATGGACATGAAG-AGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGACTCC
* *
1769 ----GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGCCGACTCCAACAAAAAGAAC
127 AGTTGATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAA-AGAAAGAAC
* ** * *
1830 TCCAAGTTGATGGACAAAAAGCGCCCTCAAAAATGCTAGATAAACGGCGTCAACTCAAAGAACAT
191 TCCAAGTTGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACAT
1895 ATCGAT
256 ATCGAT
*
1901 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAGGAGAAAGAACTCCAAGT
1 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAAGA-AAAGAACT-C-AGT
* * * * * *
1966 TGATGGACATGGAGAGCCCTCAGAAATGCTGGATAAACAG-CGTCAACTCAAAGAACAT-A-T-C
63 TGATGGACATGAAGAGCCCTCGGAAATGCTAGATAAA-AGACGTCGACTCCAAGAAAATGACTCC
2027 ----GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAAC
127 AGTTGATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAA-AGAAAGAAC
* * *
2088 TCCAAGTTGATGGACATGAAAAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACAT
191 TCCAAGTTGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACAT
2153 ATCGAT
256 ATCGAT
* *
2159 GGACACAAAGAGCCCTCGAAAATGCTAGATAAAAGACGTCGACTCCAAGAGAAAGAACTCCAAGT
1 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAAGA-AAAGAACT-C-AGT
* * * * * *
2224 TGATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACAT-A-T-C-
63 TGATGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGACTCCA
* * *
2285 ---GATGGACACGAAGAGCCTTCGGAAATACTAGATAAAAGACGTCAACTCCAAGAGAAAGAACT
128 GTTGATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAA-AGAAAGAACT
*
2347 CCAAGTTGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTTAAAGAACATA
192 CCAAGTTGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATA
2412 TCGAT
257 TCGAT
* * * * * * * * *
2417 CGACACGAAGAGACCTCGAAAATGCTAGATAAACGGCGTCGAAT-CAA-ACAA-CA-T-A-TAGA
1 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAAGAAAAGAACTCAGTTGA
2476 TGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGAGCTCCAAG
66 TGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGA-CTCC-AG
* * * * *
2541 TTGATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACT-CAAAG-AA-CA-T--
129 TTGATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAAGAAAGAACTCC
* * * * * * * *
2600 -A-TCGATATACACGAAGAGCCCTCGGAAATTCTAGATAAAAGACGTCTACTCCAAGAGAAAGAA
194 AAGTTGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACT-C-----AAAG-A
* *
2663 CTACATGTTGAT
252 --ACATATCGAT
* * * * * *
2675 GGACATGAAAAGCCCTCAGAAATGCTAGATAAACGGCGTCGACT-C----AAAGAACAT-A-TCG
1 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAAGAAAAGAAC-TCAGTTG
* *
2733 ATGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACATCGACTACAAGAGAAA-GAACTCCA
65 ATGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGA-AAATG-ACTCC-
* * * * *
2797 AGTTGATGGACATGAAGAGCCCTCAGAAATGCTAGATAAACGACGCCGACT-CAAAGAACA-TA-
127 AGTTGATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAAGAA-AGAAC
* * * * * * *
2859 T-CAA--TG---GACACGAAGAG-CCTCGGAAATGCTAGATAAAAGACGTCGACTCAAGGAAAAT
191 TCCAAGTTGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACAT
* *
2917 GTTGAT
256 ATCGAT
* * * *
2923 GGACATGAAGAGCCCTCAAAAATTCTAGATAAAAGACATCGACTCCAAGAAAATGATCTCCAAGT
1 GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAAGAAAA-GAACT-C-AGT
* *
2988 TGACGGACATGAAGAGCCCTCGAAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGAGCTCC
63 TGATGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGA-CTCC
* * * * ** * * *
3053 ATGTTGCTAGACAC-AGAGAACTCTTTGAAATGCTATATAAACGACGTCGACTCCAAAAAAATGA
127 A-GTTGATGGACACGA-AGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAAGAAA-GA
* * * *
3117 GCTCCATGTTGTTAGACATCAAGAGCCCTC-GAAAATGCTAGA
189 ACTCCAAGTTGATAGACATGAAGAGCCCTCAG-AAATGCTAGA
3159 AAATGAGCTT
Statistics
Matches: 1081, Mismatches: 120, Indels: 105
0.83 0.09 0.08
Matches are distributed among these distances:
248 47 0.04
249 94 0.09
250 4 0.00
251 3 0.00
252 1 0.00
253 7 0.01
254 5 0.00
255 10 0.01
256 13 0.01
257 131 0.12
258 721 0.67
259 11 0.01
260 4 0.00
261 3 0.00
262 1 0.00
263 2 0.00
266 10 0.01
267 14 0.01
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (261 bp):
GGACACGAAGAGCCCTCAAAAATGCTAGATAAAAGACGTCGACTCCAAGAAAAGAACTCAGTTGA
TGGACATGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGACTCCAGTT
GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAAGAAAGAACTCCAA
GTTGATAGACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCAACTCAAAGAACATATCGA
T
Found at i:2653 original size:129 final size:128
Alignment explanation
Indices: 2418--3058 Score: 789
Period size: 129 Copynumber: 5.0 Consensus size: 128
2408 CATATCGATC
* * * * *
2418 GACACGAAGAGACCTC-GAAAATGCTAGATAAACGGCGTCGAATCAAACAACATATAGATGGACA
1 GACATGAAGAGCCCTCAG-AAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACA
* *
2482 TGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGAGCTCCAAGTTGATG
65 CGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAA-GAACTCCAAGTTGATG
**
2547 GACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATATACAC
1 GACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACAC
* * * *
2612 GAAGAGCCCTCGGAAATTCTAGATAAAAGACGTCTACTCCAAGAGAAAGAACTACATGTTGATG
66 GAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGA-AAAGAACTCCAAGTTGATG
* *
2676 GACATGAAAAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACAT
1 GACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACAC
* *
2741 GAAGAGCCCTCGGAAATGCTAGATAAAAGACATCGACTACAAGAGAAAGAACTCCAAGTTGATG
66 GAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGA-AAAGAACTCCAAGTTGATG
* * *
2805 GACATGAAGAGCCCTCAGAAATGCTAGATAAACGACGCCGACTCAAAGAACATATCAATGGACAC
1 GACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACAC
*
2870 GAAGAG-CCTCGGAAATGCTAGATAAAAGACGTCGACT-CAAG-GAA-AA-T----GTTGATG
66 GAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAAGAACTCCAAGTTGATG
* * * * * * *
2924 GACATGAAGAGCCCTCAAAAATTCTAGATAAAAGACATCGACTCCAAGAAAATGATCTCCAAGTT
1 GACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACAT-A--T-C-----
* * * *
2989 GACGGACATGAAGAGCCCTCGAAAATGCTAGATAAAAGACGTCGACTCCAAGAAAATGAGCTCCA
57 GATGGACACGAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAA-GAACTCCA
*
3054 TGTTG
121 AGTTG
3059 CTAGACACAG
Statistics
Matches: 448, Mismatches: 43, Indels: 33
0.85 0.08 0.06
Matches are distributed among these distances:
119 53 0.12
120 1 0.00
122 1 0.00
123 2 0.00
124 2 0.00
125 2 0.00
127 4 0.01
128 42 0.09
129 325 0.73
130 8 0.02
131 2 0.00
133 1 0.00
134 1 0.00
138 4 0.01
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (128 bp):
GACATGAAGAGCCCTCAGAAATGCTAGATAAACGGCGTCGACTCAAAGAACATATCGATGGACAC
GAAGAGCCCTCGGAAATGCTAGATAAAAGACGTCGACTCCAAGAAAAGAACTCCAAGTTGATG
Found at i:3183 original size:48 final size:48
Alignment explanation
Indices: 3110--3206 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 48
3100 CGACTCCAAA
*
3110 AAAATGAGCTCCATGTTGTTAGACATCAAGAGCCCTCGAAAATGCTAG
1 AAAATGAGCTCCATGTTGCTAGACATCAAGAGCCCTCGAAAATGCTAG
* * * * *
3158 AAAATGAGCTTCATGTTGCTGGACATGAAGATCCCTCGGAAATGCTAG
1 AAAATGAGCTCCATGTTGCTAGACATCAAGAGCCCTCGAAAATGCTAG
3206 A
1 A
3207 TAAACGGCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.24
Consensus pattern (48 bp):
AAAATGAGCTCCATGTTGCTAGACATCAAGAGCCCTCGAAAATGCTAG
Found at i:3252 original size:117 final size:117
Alignment explanation
Indices: 3039--3275 Score: 287
Period size: 117 Copynumber: 2.0 Consensus size: 117
3029 GTCGACTCCA
* ** * *
3039 AGAAAATGAGCTCCATGTTGCTAGACACAGAGAACTCTTTGAAATGCTATATAAACGACGTCGAC
1 AGAAAATGAGCTCCATGTTGCTAGACACAGAGAACCCTCGGAAATGCTAGATAAACGACGTCAAC
* *
3104 TCCAAAAAAATGAGCTCCATGTTGTTAGACATCAAGAGCCCTCGAAAATGCT
66 TCCAAAAAAATGAGCTCCATGTCGCTAGACATCAAGAGCCCTCGAAAATGCT
* * * * *
3156 AGAAAATGAGCTTCATGTTGCTGGACA-TGAAGATCCCTCGGAAATGCTAGATAAACGGCGTCAA
1 AGAAAATGAGCTCCATGTTGCTAGACACAG-AGAACCCTCGGAAATGCTAGATAAACGACGTCAA
* * * * * * *
3220 CTCCAAGAAAATGGGCTCCATGTCGCTGGACATGAAGAGGCGTCGGAAATGCT
65 CTCCAAAAAAATGAGCTCCATGTCGCTAGACATCAAGAGCCCTCGAAAATGCT
3273 AGA
1 AGA
3276 TAAACGACGT
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
116 1 0.01
117 99 0.99
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (117 bp):
AGAAAATGAGCTCCATGTTGCTAGACACAGAGAACCCTCGGAAATGCTAGATAAACGACGTCAAC
TCCAAAAAAATGAGCTCCATGTCGCTAGACATCAAGAGCCCTCGAAAATGCT
Found at i:3267 original size:69 final size:68
Alignment explanation
Indices: 3156--3501 Score: 323
Period size: 69 Copynumber: 5.1 Consensus size: 68
3146 CGAAAATGCT
* * * * *
3156 AGAAAATGAGCTTCATGTTGCTGGACATGAAGATCCCTCGGAAATGCTAGATAAACGGCGTCAAC
1 AGAAAATGAGCTCCATGTTGCTGGACATGAAGA-CCGTCAGAAATGCTAGATAAACGACGTCTAC
3221 TCCA
65 TCCA
* * * * *
3225 AGAAAATGGGCTCCATGTCGCTGGACATGAAGAGGCGTCGGAAATGCTAGATAAACGACGTCGAC
1 AGAAAATGAGCTCCATGTTGCTGGACATGAAGA-CCGTCAGAAATGCTAGATAAACGACGTCTAC
3290 TCCA
65 TCCA
** * * * **
3294 AGAAGTTGAGCACCCTATTTTTGGACATGAAGAGCCGT------TGCTAGATAATATC--CGTCT
1 AGAAAATGAGCTCCATGTTGCTGGACATGAAGA-CCGTCAGAAATGCTAGATAA-A-CGACGTCT
3351 ACTCCA
63 ACTCCA
* *
3357 AGAAAATGAG-TCCACTGTTGCTGGACATGAAGAACTGTCAGAAATGCTAGATAAACCACGTCTA
1 AGAAAATGAGCTCCA-TGTTGCTGGACATGAAG-ACCGTCAGAAATGCTAGATAAACGACGTCTA
3421 CTCCA
64 CTCCA
* * * * * *
3426 AGAAAAGGAGCCCCCTGTTGCTGGACATGAAGAGCCATCAGAAATTCTAGATAAACAACGTCTAC
1 AGAAAATGAGCTCCATGTTGCTGGACATGAAGA-CCGTCAGAAATGCTAGATAAACGACGTCTAC
3491 TCCA
65 TCCA
3495 AGGAAAA
1 A-GAAAA
3502 CAGTCTCCTG
Statistics
Matches: 228, Mismatches: 34, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
62 2 0.01
63 45 0.20
64 2 0.01
65 1 0.00
67 1 0.00
68 2 0.01
69 168 0.74
70 7 0.03
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (68 bp):
AGAAAATGAGCTCCATGTTGCTGGACATGAAGACCGTCAGAAATGCTAGATAAACGACGTCTACT
CCA
Found at i:3329 original size:186 final size:191
Alignment explanation
Indices: 2970--3501 Score: 483
Period size: 186 Copynumber: 2.7 Consensus size: 191
2960 ATCGACTCCA
* * * * * *
2970 AGAAAATGATCTCCAAGTTGAC-GGACATGAAGAGCCCTCGAAAATGCTAGATAAAAGACGTCGA
1 AGAAAATGAGCTCCATGTTG-CTGGACATGAAGAACCCTCGGAAATGCTAGATAAACGACGTCAA
* * * * *
3034 CTCCAAGAAAATGAGCTCCATGTTGCTAGACA--CAGAGAACTCTTTGAAATGCTATATAAACGA
65 CTCCAAGAAAATGGGCTCCATGTTGCTGGACATGAAGAG-ACTC--AGAAATGCTAGATAAACGA
* * * *
3097 CGTCGACTCCAAAAAAATGAGCTCCATGTTGTTAGACATCAAGAGCC-CTCGA-AA-AT-G-CT-
127 CGTCGACTCCAAGAAAATGAGCACCATATTGTTAGACATCAAGAGCCGCTAGATAATATCGTCTC
* * *
3156 AGAAAATGAGCTTCATGTTGCTGGACATGAAGATCCCTCGGAAATGCTAGATAAACGGCGTCAAC
1 AGAAAATGAGCTCCATGTTGCTGGACATGAAGAACCCTCGGAAATGCTAGATAAACGACGTCAAC
* * *
3221 TCCAAGAAAATGGGCTCCATGTCGCTGGACATGAAGAGGCGTCGGAAATGCTAGATAAACGACGT
66 TCCAAGAAAATGGGCTCCATGTTGCTGGACATGAAGAGAC-TCAGAAATGCTAGATAAACGACGT
** * * * *
3286 CGACTCCAAGAAGTTGAGCACCCTATTTTTGGACATGAAGAGCCGTTGCTAGATAATATCCGTCT
130 CGACTCCAAGAAAATGAGCACCATATTGTTAGACATCAAGAGCC---GCTAGATAATAT-CG--T
3351 ACTCC
189 -CT-C
** * * *
3356 AAGAAAATGAG-TCCACTGTTGCTGGACATGAAGAACTGTCAGAAATGCTAGATAAACCACGTCT
1 -AGAAAATGAGCTCCA-TGTTGCTGGACATGAAGAACCCTCGGAAATGCTAGATAAACGACGTCA
* * * * *
3420 ACTCCAAGAAAA-GGAGCCCCCTGTTGCTGGACATGAAGAGCCATCAGAAATTCTAGATAAACAA
64 ACTCCAAGAAAATGG-GCTCCATGTTGCTGGACATGAAGAGAC-TCAGAAATGCTAGATAAACGA
*
3484 CGTCTACTCCAAGGAAAA
127 CGTCGACTCCAA-GAAAA
3502 CAGTCTCCTG
Statistics
Matches: 280, Mismatches: 44, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
185 1 0.00
186 138 0.49
187 1 0.00
188 6 0.02
190 4 0.01
191 2 0.01
192 2 0.01
194 1 0.00
198 2 0.01
200 5 0.02
201 115 0.41
202 3 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (191 bp):
AGAAAATGAGCTCCATGTTGCTGGACATGAAGAACCCTCGGAAATGCTAGATAAACGACGTCAAC
TCCAAGAAAATGGGCTCCATGTTGCTGGACATGAAGAGACTCAGAAATGCTAGATAAACGACGTC
GACTCCAAGAAAATGAGCACCATATTGTTAGACATCAAGAGCCGCTAGATAATATCGTCTC
Found at i:3405 original size:132 final size:132
Alignment explanation
Indices: 3214--3461 Score: 338
Period size: 132 Copynumber: 1.9 Consensus size: 132
3204 AGATAAACGG
* * *
3214 CGTCAACTCCAAGAAAATGGGCTCCATGTCGCTGGACATGAAGAGGCGTCGGAAATGCTAGATAA
1 CGTCAACTCCAAGAAAATGAGCTCCATGTCGCTGGACATGAAGAGACGTCAGAAATGCTAGATAA
* *** **
3279 ACGACGTCGACTCCAAGAAGTTGAGCACCCTATTTTTGGACATGAAGAGCCGTTGCTAGATAATA
66 ACCACGTCGACTCCAAGAAAAGGAGCACCCTATTGCTGGACATGAAGAGCCGTTGCTAGATAATA
3344 TC
131 TC
* *
3346 CGTCTACTCCAAGAAAATGAG-TCCACTGTTGCTGGACATGAAGA-ACTGTCAGAAATGCTAGAT
1 CGTCAACTCCAAGAAAATGAGCTCCA-TGTCGCTGGACATGAAGAGAC-GTCAGAAATGCTAGAT
* * *
3409 AAACCACGTCTACTCCAAGAAAAGGAGCCCCCTGTTGCTGGACATGAAGAGCC
64 AAACCACGTCGACTCCAAGAAAAGGAGCACCCTATTGCTGGACATGAAGAGCC
3462 ATCAGAAATT
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 5 0.05
132 95 0.95
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (132 bp):
CGTCAACTCCAAGAAAATGAGCTCCATGTCGCTGGACATGAAGAGACGTCAGAAATGCTAGATAA
ACCACGTCGACTCCAAGAAAAGGAGCACCCTATTGCTGGACATGAAGAGCCGTTGCTAGATAATA
TC
Found at i:3519 original size:69 final size:68
Alignment explanation
Indices: 3171--3569 Score: 271
Period size: 69 Copynumber: 5.9 Consensus size: 68
3161 ATGAGCTTCA
* * * ** *
3171 TGTTGCTGGACATGAAGATCCCTCGGAAATGCTAGATAAACGGCGTCAACTCCAAGAAAATGG-G
1 TGTTGCTGGACATGAAGAACCATCAGAAATGCTAGATAAACAACGTCTACTCCAAGAAAA-GGAG
*
3235 CTCCA
65 -TCCC
* ** * * * * ***
3240 TGTCGCTGGACATGAAGAGGCGTCGGAAATGCTAGATAAACGACGTCGACTCCAAGAAGTTGAGC
1 TGTTGCTGGACATGAAGAACCATCAGAAATGCTAGATAAACAACGTCTACTCCAAGAAAAGGAG-
*
3305 ACCC
65 TCCC
* ** * * *
3309 TATTTTTGGACATGAAG-AGC--C-G--TTGCTAGATAATATC--CGTCTACTCCAAGAAAATGA
1 TGTTGCTGGACATGAAGAACCATCAGAAATGCTAGATAA-A-CAACGTCTACTCCAAGAAAAGGA
3366 GTCCAC
64 GTCC-C
** *
3372 TGTTGCTGGACATGAAGAACTGTCAGAAATGCTAGATAAACCACGTCTACTCCAAGAAAAGGAGC
1 TGTTGCTGGACATGAAGAACCATCAGAAATGCTAGATAAACAACGTCTACTCCAAGAAAAGGAG-
*
3437 CCCC
65 TCCC
* * *
3441 TGTTGCTGGACATGAAGAGCCATCAGAAATTCTAGATAAACAACGTCTACTCCAAGGAAAA-CAG
1 TGTTGCTGGACATGAAGAACCATCAGAAATGCTAGATAAACAACGTCTACTCCAA-GAAAAGGAG
3505 TCTCC
65 TC-CC
** * ** * * * *
3510 TGGTT-CTGGACACAAAGAACCACCAGAAATGCTCTATAAACGACCTGTACTCCAAAAAAA
1 T-GTTGCTGGACATGAAGAACCATCAGAAATGCTAGATAAACAACGTCTACTCCAAGAAAA
3570 AGAACCACCT
Statistics
Matches: 267, Mismatches: 47, Indels: 33
0.77 0.14 0.10
Matches are distributed among these distances:
62 2 0.01
63 43 0.16
64 2 0.01
65 2 0.01
66 2 0.01
67 2 0.01
68 9 0.03
69 195 0.73
70 10 0.04
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (68 bp):
TGTTGCTGGACATGAAGAACCATCAGAAATGCTAGATAAACAACGTCTACTCCAAGAAAAGGAGT
CCC
Done.