Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00478.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3215
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35


Found at i:1272 original size:72 final size:72

Alignment explanation


    Indices: 1037--1275  Score: 370
    Period size: 72  Copynumber: 3.3  Consensus size: 72

       1027 CACCTTTATC

                              *      *                              *        
       1037 TTTCAGAAAATCAATTAACTGGTCAGATTCCATTGTCTATAGGGGAGTTATCATCTCTGAAGTTG
          1 TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTG

                   
       1102 TTTGATG
         66 TTTGATG

                 *       *     *  *        *            *              *    *
       1109 TTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTTGGAGTTT
          1 TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTG

                   
       1174 TTTGATG
         66 TTTGATG

                                           *                                 
       1181 TTTCAGAAAATCAATTAAATGGTCAAATTCCGTTGTCTATAGGGGAGTTATCATCTTTGAAGTTG
          1 TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTG

                   
       1246 TTTGATG
         66 TTTGATG

                                   
       1253 TTTCAGAAAATCAATTAAATGGT
          1 TTTCAGAAAATCAATTAAATGGT

       1276 ACTTTTCCTC


Statistics
Matches: 148,  Mismatches: 19, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  72  148  1.00

ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38


Consensus pattern (72 bp):   
TTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTG
TTTGATG
Done.