Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00481.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4511
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36


Found at i:1068 original size:72 final size:72

Alignment explanation


    Indices: 948--1160  Score: 320
    Period size: 72  Copynumber: 3.0  Consensus size: 72

        938 GCTACCTACC

                 *              *    *  *        *            *              
        948 TTGATCTTTCAGAAAATCAACTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTTG
          1 TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG

                 * 
       1013 GAGTTGT
         66 GAGTTAT

                                                       *                     
       1020 TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCGATAGGGGAGTTATCATCTTTG
          1 TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG

                   
       1085 GAGTTAT
         66 GAGTTAT

                                            **                               
       1092 TTGATGTTTCAGAAAATCAATTAAATGGT-ACTTTTCCATTGTCTATAGGGGAGTTATCATCTTT
          1 TTGATGTTTCAGAAAATCAATTAAATGGTCA-AATTCCATTGTCTATAGGGGAGTTATCATCTTT

                 
       1156 GGAGT
         65 GGAGT

       1161 ATCTGGGTTT


Statistics
Matches: 129,  Mismatches: 11, Indels: 2
        0.91            0.08        0.01

Matches are distributed among these distances:
  71    1  0.01
  72  128  0.99

ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38


Consensus pattern (72 bp):   
TTGATGTTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
GAGTTAT
Done.