Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00485.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3041
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:1132 original size:72 final size:72

Alignment explanation


    Indices: 1012--1220  Score: 303
    Period size: 72  Copynumber: 2.9  Consensus size: 72

       1002 GTTACTTACC

                 *              *    *  *        *            *              
       1012 TTGATCTTTCAGAAAATCAACTAAACGGCCAAATTCCCTTGTCTATAGGGCAGTTATCATCTTTG
          1 TTGATATTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG

                 * 
       1077 GAGTTGT
         66 GAGTTAT

                                                       *                     
       1084 TTGATATTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCGATAGGGGAGTTATCATCTTTG
          1 TTGATATTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG

                   
       1149 GAGTTAT
         66 GAGTTAT

                 *                          **                               
       1156 TTGATGTTTCAGAAAATCAATTAAATGGT-ACTTTTCCATTGTCTATAGGGGAGTTATCATCTTT
          1 TTGATATTTCAGAAAATCAATTAAATGGTCA-AATTCCATTGTCTATAGGGGAGTTATCATCTTT

             
       1220 G
         65 G

       1221 AAGTATCTGG


Statistics
Matches: 124,  Mismatches: 12, Indels: 2
        0.90            0.09        0.01

Matches are distributed among these distances:
  71    1  0.01
  72  123  0.99

ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Consensus pattern (72 bp):   
TTGATATTTCAGAAAATCAATTAAATGGTCAAATTCCATTGTCTATAGGGGAGTTATCATCTTTG
GAGTTAT
Done.