Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00489.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3558
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31


Found at i:1364 original size:21 final size:19

Alignment explanation


    Indices: 1340--1378  Score: 60
    Period size: 21  Copynumber: 1.9  Consensus size: 19

       1330 ATTTGCCTCC

                                 
       1340 CTATCTAAGACCATGTTTCCT
          1 CTATCTAAG-CCAT-TTTCCT

                              
       1361 CTATCTAAGCCATTTTCC
          1 CTATCTAAGCCATTTTCC

       1379 GGAGGATTAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    5  0.28
  20    4  0.22
  21    9  0.50

ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38


Consensus pattern (19 bp):   
CTATCTAAGCCATTTTCCT
Done.