Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00502.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3296
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:1249 original size:72 final size:72

Alignment explanation


    Indices: 1137--1277  Score: 219
    Period size: 72  Copynumber: 2.0  Consensus size: 72

       1127 TTTTGGTCCC

                                             * *            *               *
       1137 ATTCCATTGTCGATAGGGGAGTTATCATCTTTGTATTTCTTTGATGTTTCAGAAAATCAATTAAG
          1 ATTCCATTGTCGATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGAAAATCAATTAAA

                   
       1202 TGGTCAA
         66 TGGTCAA

                       *                                         *     *     
       1209 ATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGATAATCAGTTAAA
          1 ATTCCATTGTCGATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGAAAATCAATTAAA

                
       1274 TGGT
         66 TGGT

       1278 ACTTTTCCTC


Statistics
Matches: 62,  Mismatches: 7, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  72   62  1.00

ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40


Consensus pattern (72 bp):   
ATTCCATTGTCGATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGAAAATCAATTAAA
TGGTCAA
Done.