Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00503.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2892
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33


Found at i:2735 original size:14 final size:15

Alignment explanation


    Indices: 2707--2735  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2697 AGCAAAAAAT

                           
       2707 GGAAGTAACAGTGAA
          1 GGAAGTAACAGTGAA

                           
       2722 GGAAGTAA-AGTGAA
          1 GGAAGTAACAGTGAA

       2736 TTGGCTTTAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.48, C:0.03, G:0.34, T:0.14


Consensus pattern (15 bp):   
GGAAGTAACAGTGAA
Done.