Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00512.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5480
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:1149 original size:72 final size:72

Alignment explanation


    Indices: 1037--1201  Score: 249
    Period size: 72  Copynumber: 2.3  Consensus size: 72

       1027 CCTTGATCTC

                                         * **  *                       * **  
       1037 TCAGAAAATCAATTAAACGGTCAAATTCCGTTGTCTATAGGGAAGTTATCATCTTTGAAGTTGTT
          1 TCAGAAAATCAATTAAACGGTCAAATTCCATCATCGATAGGGAAGTTATCATCTTTGAAATACTT

                   
       1102 TGATGTT
         66 TGATGTT

                             *                        *                      
       1109 TCAGAAAATCAATTAAATGGTCAAATTCCATCATCGATAGGGGAGTTATCATCTTTGAAATACTT
          1 TCAGAAAATCAATTAAACGGTCAAATTCCATCATCGATAGGGAAGTTATCATCTTTGAAATACTT

                   
       1174 TGATGTT
         66 TGATGTT

                                 
       1181 TCAGAAAATCAATTAAACGGT
          1 TCAGAAAATCAATTAAACGGT

       1202 ACTTTTCCTC


Statistics
Matches: 83,  Mismatches: 10, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  72   83  1.00

ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35


Consensus pattern (72 bp):   
TCAGAAAATCAATTAAACGGTCAAATTCCATCATCGATAGGGAAGTTATCATCTTTGAAATACTT
TGATGTT
Done.