Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00516.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1965
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34


Found at i:1255 original size:46 final size:46

Alignment explanation


    Indices: 1180--1269  Score: 112
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       1170 ATTGAGGCGT

                              *           *                
       1180 TTAAATGCTGCAAATTATGAGGTTCGAAAGTTGGAAA-TTGAGGTAA
          1 TTAAATGCTGCAAATTATCAGGTTCGAAAGCT-GAAATTTGAGGTAA

                         *      *                        
       1226 TTAAATGCTGCAATTTATCATG-TCTGAAAGCTGAAATTTGAGGT
          1 TTAAATGCTGCAAATTATCAGGTTC-GAAAGCTGAAATTTGAGGT

       1270 GCTAATGCTG


Statistics
Matches: 38,  Mismatches: 4, Indels: 4
        0.83            0.09        0.09

Matches are distributed among these distances:
  45    6  0.16
  46   32  0.84

ACGTcount: A:0.34, C:0.09, G:0.23, T:0.33


Consensus pattern (46 bp):   
TTAAATGCTGCAAATTATCAGGTTCGAAAGCTGAAATTTGAGGTAA
Done.