Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00517.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1047
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.41


Found at i:832 original size:21 final size:21

Alignment explanation


    Indices: 806--849  Score: 79
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        796 CTAAGTCTTC

                    *            
        806 AATGCTGAGGTGAAATGGTGA
          1 AATGCTGAAGTGAAATGGTGA

                                 
        827 AATGCTGAAGTGAAATGGTGA
          1 AATGCTGAAGTGAAATGGTGA

              
        848 AA
          1 AA

        850 CTCTTGGCAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.39, C:0.05, G:0.34, T:0.23


Consensus pattern (21 bp):   
AATGCTGAAGTGAAATGGTGA
Done.