Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00530.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2793
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32


Found at i:101 original size:32 final size:32

Alignment explanation


    Indices: 60--124  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

         50 AGAAAAAGTG

                                            
         60 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
          1 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC

                                            
         92 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
          1 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC

             
        124 A
          1 A

        125 ATCACCCTTA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31


Consensus pattern (32 bp):   
AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
Done.