Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00547.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1462
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35


Found at i:1103 original size:72 final size:72

Alignment explanation


    Indices: 1010--1321  Score: 269
    Period size: 72  Copynumber: 4.3  Consensus size: 72

       1000 TCCCATCAAC

                            **         *  *       ***       *    *           
       1010 TATTGGAAA-CTTGACCACTCTCGAAGTTCTTCATCTTTCCAATAACAGCTTATCAGGTGAAATT
          1 TATTGGAAACCTT-ACTTCTCTCGAAGCTCATCATCTTAATAATAACAACTTAACAGGTGAAATT

               *     
       1074 CC-GCTGGT
         65 CCTCCT-GT

                                    *  *          *                          
       1082 TATTGGAAACCTTACTTCTCTCG-TGCGCATCAGTCTTGATAATAACAACTTAACAGGTGAAATT
          1 TATTGGAAACCTTACTTCTCTCGAAGCTCATCA-TCTTAATAATAACAACTTAACAGGTGAAATT

                    
       1146 CCTCCTGT
         65 CCTCCTGT

                     *     *             * * **               *  *           
       1154 TATT-GAAAACTTGAGTTCTCTCGGAA-CACTTTTTCTTAATAATAACAAATTGACAGGTGAAAT
          1 TATTGGAAACCTT-ACTTCTCTC-GAAGCTCATCATCTTAATAATAACAACTTAACAGGTGAAAT

                   *  
       1217 TCCAT-CGGT
         64 TCC-TCCTGT

                       *            * *            *                         
       1226 TATTGGAAACCGTACTTCTCTC-ATGTTCATCAATCTTAGTAATAACAACTTAACAGGTGAAATT
          1 TATTGGAAACCTTACTTCTCTCGAAGCTCATC-ATCTTAATAATAACAACTTAACAGGTGAAATT

                    
       1290 CCTCCTGT
         65 CCTCCTGT

                             *      
       1298 TATTGGAAACCTTACTTTTCTCGA
          1 TATTGGAAACCTTACTTCTCTCGA

       1322 GGCCTTTGAT


Statistics
Matches: 190,  Mismatches: 38, Indels: 23
        0.76            0.15        0.09

Matches are distributed among these distances:
  70    1  0.01
  71   15  0.08
  72  157  0.83
  73   17  0.09

ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35


Consensus pattern (72 bp):   
TATTGGAAACCTTACTTCTCTCGAAGCTCATCATCTTAATAATAACAACTTAACAGGTGAAATTC
CTCCTGT

Done.