Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00547.P4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2908
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Found at i:2549 original size:72 final size:72
Alignment explanation
Indices: 2456--2767 Score: 269
Period size: 72 Copynumber: 4.3 Consensus size: 72
2446 TCCCATCAAC
** * * *** * *
2456 TATTGGAAA-CTTGACCACTCTCGAAGTTCTTCATCTTTCCAATAACAGCTTATCAGGTGAAATT
1 TATTGGAAACCTT-ACTTCTCTCGAAGCTCATCATCTTAATAATAACAACTTAACAGGTGAAATT
*
2520 CC-GCTGGT
65 CCTCCT-GT
* * *
2528 TATTGGAAACCTTACTTCTCTCG-TGCGCATCAGTCTTGATAATAACAACTTAACAGGTGAAATT
1 TATTGGAAACCTTACTTCTCTCGAAGCTCATCA-TCTTAATAATAACAACTTAACAGGTGAAATT
2592 CCTCCTGT
65 CCTCCTGT
* * * * ** * *
2600 TATT-GAAAACTTGAGTTCTCTCGGAA-CACTTTTTCTTAATAATAACAAATTGACAGGTGAAAT
1 TATTGGAAACCTT-ACTTCTCTC-GAAGCTCATCATCTTAATAATAACAACTTAACAGGTGAAAT
*
2663 TCCAT-CGGT
64 TCC-TCCTGT
* * * *
2672 TATTGGAAACCGTACTTCTCTC-ATGTTCATCAATCTTAGTAATAACAACTTAACAGGTGAAATT
1 TATTGGAAACCTTACTTCTCTCGAAGCTCATC-ATCTTAATAATAACAACTTAACAGGTGAAATT
2736 CCTCCTGT
65 CCTCCTGT
*
2744 TATTGGAAACCTTACTTTTCTCGA
1 TATTGGAAACCTTACTTCTCTCGA
2768 GGCCTTTGAT
Statistics
Matches: 190, Mismatches: 38, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
70 1 0.01
71 15 0.08
72 157 0.83
73 17 0.09
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (72 bp):
TATTGGAAACCTTACTTCTCTCGAAGCTCATCATCTTAATAATAACAACTTAACAGGTGAAATTC
CTCCTGT
Done.