Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00552.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1326
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37


Found at i:291 original size:92 final size:92

Alignment explanation


    Indices: 134--316  Score: 330
    Period size: 92  Copynumber: 2.0  Consensus size: 92

        124 TTCTTCTAGT

                                       *        *    *            *          
        134 TGATATCCAAACATTTTAACATTTAAAGATGCATATTGCAGGCGTAAAAAATGATTATTTGCAGT
          1 TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGT

                                       
        199 GGATATTTGCATTGATTCTGCAACTTG
         66 GGATATTTGCATTGATTCTGCAACTTG

                                                                             
        226 TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGT
          1 TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGT

                                      
        291 GGATATTTGCATTGATTCTGCAACTT
         66 GGATATTTGCATTGATTCTGCAACTT

        317 ATGTGCGTGT


Statistics
Matches: 87,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  92   87  1.00

ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Consensus pattern (92 bp):   
TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGT
GGATATTTGCATTGATTCTGCAACTTG

Found at i:1250 original size:96 final size:96

Alignment explanation


    Indices: 1086--1277  Score: 375
    Period size: 96  Copynumber: 2.0  Consensus size: 96

       1076 AACTTGCAAG

                                                                             
       1086 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
          1 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG

                                *          
       1151 GAAAAACAAGTATTTGTATTGACACTGGTGT
         66 GAAAAACAAGTATTTGTATTCACACTGGTGT

                                                                             
       1182 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
          1 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG

                                           
       1247 GAAAAACAAGTATTTGTATTCACACTGGTGT
         66 GAAAAACAAGTATTTGTATTCACACTGGTGT

       1278 TCCTTGCAAA


Statistics
Matches: 95,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  96   95  1.00

ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33


Consensus pattern (96 bp):   
CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
GAAAAACAAGTATTTGTATTCACACTGGTGT

Done.