Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00552.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 434

Length: 724
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:648 original size:96 final size:96

Alignment explanation


    Indices: 484--675  Score: 375
    Period size: 96  Copynumber: 2.0  Consensus size: 96

        474 AACTTGCAAG

                                                                             
        484 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
          1 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG

                                *          
        549 GAAAAACAAGTATTTGTATTGACACTGGTGT
         66 GAAAAACAAGTATTTGTATTCACACTGGTGT

                                                                             
        580 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
          1 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG

                                           
        645 GAAAAACAAGTATTTGTATTCACACTGGTGT
         66 GAAAAACAAGTATTTGTATTCACACTGGTGT

        676 TCCTTGCAAA


Statistics
Matches: 95,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  96   95  1.00

ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33


Consensus pattern (96 bp):   
CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
GAAAAACAAGTATTTGTATTCACACTGGTGT

Done.