Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00557.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1565
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36


Found at i:479 original size:51 final size:51

Alignment explanation


    Indices: 403--552  Score: 291
    Period size: 51  Copynumber: 2.9  Consensus size: 51

        393 AGTTGGACTG

                                                               
        403 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA
          1 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA

                                                              *
        454 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTG
          1 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA

                                                            
        505 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTA
          1 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTA

        553 CTTATGGGGA


Statistics
Matches: 98,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  51   98  1.00

ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37


Consensus pattern (51 bp):   
CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA
Done.