Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00566.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 426

Length: 710
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35


Found at i:345 original size:28 final size:28

Alignment explanation


    Indices: 313--378  Score: 132
    Period size: 28  Copynumber: 2.4  Consensus size: 28

        303 TTAAAAAATG

                                        
        313 TATTTGGGCTGCTTTTAATTTAATTTAT
          1 TATTTGGGCTGCTTTTAATTTAATTTAT

                                        
        341 TATTTGGGCTGCTTTTAATTTAATTTAT
          1 TATTTGGGCTGCTTTTAATTTAATTTAT

                      
        369 TATTTGGGCT
          1 TATTTGGGCT

        379 TGATAGTTTG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   38  1.00

ACGTcount: A:0.20, C:0.08, G:0.17, T:0.56


Consensus pattern (28 bp):   
TATTTGGGCTGCTTTTAATTTAATTTAT
Done.