Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00568.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4441
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29


Found at i:4257 original size:21 final size:21

Alignment explanation


    Indices: 4231--4270  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       4221 ACTTAGAGCA

                        *        
       4231 GAGGCAGCAGCGCGGGAGGTG
          1 GAGGCAGCAGCGAGGGAGGTG

                               
       4252 GAGGCAGCAGCGAGGGAGG
          1 GAGGCAGCAGCGAGGGAGG

       4271 CGAAGCAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.23, C:0.17, G:0.57, T:0.03


Consensus pattern (21 bp):   
GAGGCAGCAGCGAGGGAGGTG
Done.