Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00574.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33


Found at i:93 original size:3 final size:3

Alignment explanation


    Indices: 85--115  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

         75 TTCATCCTTT

                                                     
         85 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T

        116 CTGAAACTCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Found at i:173 original size:16 final size:17

Alignment explanation


    Indices: 150--194  Score: 56
    Period size: 16  Copynumber: 2.7  Consensus size: 17

        140 AATGCTTCAA

                     *    *  
        150 TCTCTCCTTTCCCTTTC
          1 TCTCTCCTTCCCCTCTC

                             
        167 T-TCTCCTTCCCCTCTC
          1 TCTCTCCTTCCCCTCTC

                   *    
        183 TCTCTCCCTCCC
          1 TCTCTCCTTCCC

        195 TTCCATAACC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  16   14  0.58
  17   10  0.42

ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44


Consensus pattern (17 bp):   
TCTCTCCTTCCCCTCTC
Done.