Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00130.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1793
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27


Found at i:1502 original size:72 final size:71

Alignment explanation


    Indices: 1405--1644  Score: 318
    Period size: 72  Copynumber: 3.3  Consensus size: 71

       1395 GGATGAACTT

                             *                                               
       1405 GAGAAGGATGAGGCCTCAAAGAAAGCCGAGGTTAAAGAATCTCGAGAACTGAAAATCGAACACAA
          1 GAGAAGGATGA-GCCTCGAAGAAAGCCGAGGTTAAAGAATCTCGAGAACTGAAAATCGAACACAA

                   
       1470 GTATCTC
         65 GTATCTC

            *               *                                       *        
       1477 AAGAAGGATGAGCCCTTGAAGAAAGCCGAGGTTAAAGAATCTCGAGAACTGAAAATTGAACACAA
          1 GAGAAGGATGAG-CCTCGAAGAAAGCCGAGGTTAAAGAATCTCGAGAACTGAAAATCGAACACAA

              *  * 
       1542 GTGTCCC
         65 GTATCTC

                    *    *                           * *    *                
       1549 GAGAAGGACGAAGTCTCGAAGAAAGCCGAGGTTAAAGAATCCCAAGAATTGAAAATCGAACACAA
          1 GAGAAGGATG-AGCCTCGAAGAAAGCCGAGGTTAAAGAATCTCGAGAACTGAAAATCGAACACAA

            *      
       1614 ATATCTC
         65 GTATCTC

                 *  *               
       1621 GAGAAAGAGGAAGCCTCGAAGAAA
          1 GAGAAGGATG-AGCCTCGAAGAAA

       1645 ACCAAATTTT


Statistics
Matches: 146,  Mismatches: 20, Indels: 4
        0.86            0.12        0.02

Matches are distributed among these distances:
  71    1  0.01
  72  143  0.98
  73    2  0.01

ACGTcount: A:0.43, C:0.17, G:0.25, T:0.15


Consensus pattern (71 bp):   
GAGAAGGATGAGCCTCGAAGAAAGCCGAGGTTAAAGAATCTCGAGAACTGAAAATCGAACACAAG
TATCTC
Done.