Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00580.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 359

Length: 599
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32


Found at i:45 original size:12 final size:12

Alignment explanation


    Indices: 28--65  Score: 67
    Period size: 12  Copynumber: 3.2  Consensus size: 12

         18 GGTTACCCGC

                        
         28 TTCTCATCTTCT
          1 TTCTCATCTTCT

                        
         40 TTCTCATCTTCT
          1 TTCTCATCTTCT

                     *  
         52 TTCTCATCTCCT
          1 TTCTCATCTTCT

              
         64 TT
          1 TT

         66 TACTCTCAAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.08, C:0.34, G:0.00, T:0.58


Consensus pattern (12 bp):   
TTCTCATCTTCT
Done.