Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00589.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1198
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30


Found at i:566 original size:26 final size:25

Alignment explanation


    Indices: 514--566  Score: 63
    Period size: 26  Copynumber: 2.0  Consensus size: 25

        504 TTTATAGTTT

                                      
        514 TACCCCTAGTAGATAAATTACCGAAA
          1 TACCCCTAG-AGATAAATTACCGAAA

                                   *   
        540 TACCCCTAG-GATTAAATTGACCTAAA
          1 TACCCCTAGAGA-TAAATT-ACCGAAA

             
        566 T
          1 T

        567 GCATGTTTGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  24    2  0.08
  25    6  0.25
  26   16  0.67

ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26


Consensus pattern (25 bp):   
TACCCCTAGAGATAAATTACCGAAA
Done.