Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00589.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 523

Length: 873
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30


Found at i:230 original size:26 final size:26

Alignment explanation


    Indices: 193--276  Score: 150
    Period size: 26  Copynumber: 3.2  Consensus size: 26

        183 TGATACAAAT

                   *               *  
        193 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        219 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        245 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        271 TGATAA
          1 TGATAA

        277 GAATTTCATG


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   56  1.00

ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA
Done.