Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00600.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 392

Length: 654
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:162 original size:21 final size:21

Alignment explanation


    Indices: 138--183  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        128 GCTCGTGCCT

                   *             
        138 CTGCCTCTCTCGCTGCAGCCG
          1 CTGCCTCCCTCGCTGCAGCCG

                       *    *   *
        159 CTGCCTCCCTCTCTGCTGCCT
          1 CTGCCTCCCTCGCTGCAGCCG

                
        180 CTGC
          1 CTGC

        184 TCTAAGTTGT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28


Consensus pattern (21 bp):   
CTGCCTCCCTCGCTGCAGCCG
Done.