Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00604.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 475

Length: 792
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31


Found at i:73 original size:21 final size:21

Alignment explanation


    Indices: 47--104  Score: 82
    Period size: 21  Copynumber: 2.8  Consensus size: 21

         37 AGGCTAATTT

                            *    
         47 TAATGGTCAAAATTGGCA-GG
          1 TAATGGTCAAAATTGGAATGG

                     *            
         67 CTAATGGTCCAAATTGGAATGG
          1 -TAATGGTCAAAATTGGAATGG

                            
         89 TAATGGTCAAAATTGG
          1 TAATGGTCAAAATTGG

        105 GGTGTCTTTT


Statistics
Matches: 33,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  21   31  0.94
  22    2  0.06

ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28


Consensus pattern (21 bp):   
TAATGGTCAAAATTGGAATGG
Done.