Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00605.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.35


Found at i:877 original size:21 final size:19

Alignment explanation


    Indices: 833--868  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        823 ACAGTCGCCG

                 *             
        833 GTGGTTGATGGCTCTTCTC
          1 GTGGTGGATGGCTCTTCTC

                              
        852 GTGGTGGATGG-TCTTCT
          1 GTGGTGGATGGCTCTTCT

        869 TTTCGTGGTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    6  0.38
  19   10  0.62

ACGTcount: A:0.06, C:0.17, G:0.36, T:0.42


Consensus pattern (19 bp):   
GTGGTGGATGGCTCTTCTC
Done.