Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00609.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2590
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:2555 original size:22 final size:22

Alignment explanation


    Indices: 2530--2574  Score: 74
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2520 AGTTTATTTC

                                   
       2530 ATTCCTT-CGGTATATCTCTATA
          1 ATTCCTTGC-GTATATCTCTATA

                                  
       2552 ATTCCTTGCGTATATCTCTATA
          1 ATTCCTTGCGTATATCTCTATA

             
       2574 A
          1 A

       2575 GCTTTTTATA


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  22   21  0.95
  23    1  0.05

ACGTcount: A:0.24, C:0.22, G:0.09, T:0.44


Consensus pattern (22 bp):   
ATTCCTTGCGTATATCTCTATA
Done.