Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00621.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3480
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31


Found at i:2987 original size:27 final size:27

Alignment explanation


    Indices: 2957--3037  Score: 153
    Period size: 27  Copynumber: 3.0  Consensus size: 27

       2947 TAGAATAGTG

                                *      
       2957 TATGAGAGCGATTTGGAAGAAATGGAA
          1 TATGAGAGCGATTTGGAAGAGATGGAA

                                       
       2984 TATGAGAGCGATTTGGAAGAGATGGAA
          1 TATGAGAGCGATTTGGAAGAGATGGAA

                                       
       3011 TATGAGAGCGATTTGGAAGAGATGGAA
          1 TATGAGAGCGATTTGGAAGAGATGGAA

       3038 CAAATACAAG


Statistics
Matches: 53,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  27   53  1.00

ACGTcount: A:0.38, C:0.04, G:0.36, T:0.22


Consensus pattern (27 bp):   
TATGAGAGCGATTTGGAAGAGATGGAA
Done.