Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00622.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1928
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:1640 original size:35 final size:36

Alignment explanation


    Indices: 1594--1662  Score: 122
    Period size: 35  Copynumber: 1.9  Consensus size: 36

       1584 CAGTTTTTTT

                                                
       1594 TTATTCTGTCACGGCTGGAGT-CGTGGGCACGACGC
          1 TTATTCTGTCACGGCTGGAGTCCGTGGGCACGACGC

                                              
       1629 TTATTCTGTCACGGCTGGAGTCGCGTGGGCACGA
          1 TTATTCTGTCACGGCTGGAGTC-CGTGGGCACGA

       1663 TGCGGATCTG


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  35   21  0.66
  37   11  0.34

ACGTcount: A:0.14, C:0.25, G:0.35, T:0.26


Consensus pattern (36 bp):   
TTATTCTGTCACGGCTGGAGTCCGTGGGCACGACGC
Done.