Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00625.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5181
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:3528 original size:210 final size:210

Alignment explanation


    Indices: 2939--3554  Score: 910
    Period size: 210  Copynumber: 2.9  Consensus size: 210

       2929 AGGCTTAAGC

                        *  *            *      *              *              
       2939 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTAGAATGGAATCTCTT
          1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT

                *     *                  *                                   
       3004 GAAATGTTAAGTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
         66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA

                                                                      *      
       3069 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
        131 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCGGAAATC

                       *   
       3134 TCAGAAGACTTGAAG
        196 TCAGAAGACTTAAAG

                               *                           *                 
       3149 TTTTGAATTTAAAAGACTGTAAAAGTCTTAGGAGTCTTCCAACCAAATTTGGAATGGAATCTCTT
          1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT

                                                     *                       
       3214 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTGCCAGAGATTGATGGGAAAATGGA
         66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA

                  *                                                          
       3279 ATGTTTATTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCGGAAATC
        131 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCGGAAATC

             *             
       3344 TTAGAAGACTTAAAG
        196 TCAGAAGACTTAAAG

                    *                                 *                      
       3359 TTTTGAATCTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAATGGAATCTCTT
          1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT

            *                         *      *    *                 *        
       3424 AAAAAGTTAATTCTTTCAGGTTGCTCCAATCTTAAAAGGTTTCCAGAGATTGATGGCAAAATGGA
         66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA

               **  * *     * *   *      * ***                         *      
       3489 ATGCCTGCTAGAGCTCTATTTAGATGGGTCGGGCATTAAAGAGCTACCTAT-TTCAATTGGAAAT
        131 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCT-TCTTCAATCGGAAAT

              
       3553 CT
        195 CT

       3555 GAGCAGTCTT


Statistics
Matches: 367,  Mismatches: 38, Indels: 2
        0.90            0.09        0.00

Matches are distributed among these distances:
 210  366  1.00
 211    1  0.00

ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Consensus pattern (210 bp):   
TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCGGAAATC
TCAGAAGACTTAAAG
Done.